LICENSE
MANIFEST.in
README.md
pyproject.toml
setup.cfg
setup.py
R/MAFinBED.R
R/dashboard_markdown_generator.R
R/dashboard_template_functions.R
R/install_packages.R
R/mergeCheck.R
R/mergecheck_functions.R
R/test_flag_variants.R
R/tests/testthat/test_dashboard_template_functions.R
aacrgenie.egg-info/PKG-INFO
aacrgenie.egg-info/SOURCES.txt
aacrgenie.egg-info/dependency_links.txt
aacrgenie.egg-info/entry_points.txt
aacrgenie.egg-info/not-zip-safe
aacrgenie.egg-info/requires.txt
aacrgenie.egg-info/top_level.txt
bin/database_to_staging.py
bin/input_to_database.py
genie/__init__.py
genie/__main__.py
genie/config.py
genie/consortium_to_public.py
genie/create_case_lists.py
genie/dashboard_table_updater.py
genie/database_to_staging.py
genie/example_filetype_format.py
genie/extract.py
genie/input_to_database.py
genie/load.py
genie/process_functions.py
genie/process_mutation.py
genie/toRetract.py
genie/transform.py
genie/validate.py
genie/write_invalid_reasons.py
genie_registry/__init__.py
genie_registry/assay.py
genie_registry/bed.py
genie_registry/clinical.py
genie_registry/cna.py
genie_registry/maf.py
genie_registry/mutationsInCis.py
genie_registry/patientRetraction.py
genie_registry/sampleRetraction.py
genie_registry/seg.py
genie_registry/structural_variant.py
genie_registry/vcf.py
genie_registry/workflow.py
templates/dashboardTemplate.Rmd
templates/data_guide_template.Rnw
tests/__init__.py
tests/conftest.py
tests/test_assay.py
tests/test_bed.py
tests/test_clinical.py
tests/test_cna.py
tests/test_create_case_lists.py
tests/test_database_to_staging.py
tests/test_example_filetype_format.py
tests/test_extract.py
tests/test_filters.py
tests/test_input_to_database.py
tests/test_load.py
tests/test_maf.py
tests/test_mutations_in_cis.py
tests/test_process_functions.py
tests/test_process_mutation.py
tests/test_retraction.py
tests/test_seg.py
tests/test_sv.py
tests/test_transform.py
tests/test_validate.py
tests/test_vcf.py
tests/test_workflow.py
tests/test_write_invalid_reasons.py