LICENSE
MANIFEST.in
README.md
requirements.txt
setup.cfg
setup.py
abutils/__init__.py
abutils/bin.py
abutils/cl.py
abutils/io.py
abutils/pl.py
abutils/tl.py
abutils/version.py
abutils.egg-info/PKG-INFO
abutils.egg-info/SOURCES.txt
abutils.egg-info/dependency_links.txt
abutils.egg-info/requires.txt
abutils.egg-info/top_level.txt
abutils/core/__init__.py
abutils/core/lineage.py
abutils/core/pair.py
abutils/core/sequence.py
abutils/plots/__init__.py
abutils/plots/bar.py
abutils/plots/base.py
abutils/plots/data.py
abutils/plots/donut.py
abutils/plots/heatmap.py
abutils/plots/kde.py
abutils/plots/lineage.py
abutils/plots/ridge.py
abutils/plots/ring.py
abutils/plots/scatter.py
abutils/plots/summary.py
abutils/plots/utils.py
abutils/plots/mixins/__init__.py
abutils/plots/mixins/hue.py
abutils/plots/models/__init__.py
abutils/plots/models/data.py
abutils/tests/__init__.py
abutils/tests/test_alignment.py
abutils/tests/test_clonify.py
abutils/tests/test_cloning.py
abutils/tests/test_cluster.py
abutils/tests/test_color.py
abutils/tests/test_pair.py
abutils/tests/test_phylo.py
abutils/tests/test_sequence.py
abutils/tests/test_utilities.py
abutils/tools/__init__.py
abutils/tools/alignment.py
abutils/tools/clonify.py
abutils/tools/cloning.py
abutils/tools/cluster.py
abutils/tools/phylo.py
abutils/tools/preprocessing.py
abutils/tools/similarity.py
abutils/utils/__init__.py
abutils/utils/alignment.py
abutils/utils/circos.py
abutils/utils/cluster.py
abutils/utils/codons.py
abutils/utils/color.py
abutils/utils/convert.py
abutils/utils/database.py
abutils/utils/decorators.py
abutils/utils/germlines.py
abutils/utils/jobs.py
abutils/utils/log.py
abutils/utils/mongodb.py
abutils/utils/phylogeny.py
abutils/utils/pipeline.py
abutils/utils/progbar.py
abutils/utils/s3.py
abutils/utils/seqio.py
abutils/utils/ssh_tunnel.py
abutils/utils/utilities.py
abutils/utils/matrices/blosum62
abutils/utils/matrices/match1mismatch0
abutils/utils/matrices/match3mismatch2
docs/doc_requirements.txt