Metadata-Version: 2.1
Name: abeona
Version: 0.23.1
Summary: UNKNOWN
Home-page: https://github.com/winni2k/abeona
Author: Warren W. Kretzschmar
Author-email: warrenk@kth.se
Maintainer: Warren W. Kretzschmar
Maintainer-email: warrenk@kth.se
License: Apache-2.0
Platform: UNKNOWN
Classifier: Development Status :: 3 - Alpha
Classifier: Intended Audience :: Science/Research
Classifier: License :: OSI Approved :: Apache Software License
Classifier: Natural Language :: English
Classifier: Operating System :: OS Independent
Classifier: Programming Language :: Python :: 3.6
Classifier: Programming Language :: Python :: 3.7
Requires-Dist: cortexpy (>=0.41.0)
Requires-Dist: pandas
Requires-Dist: progressbar2

abeona
======

abeona v0.23.1

A simple transcriptome assembler based on kallisto and Cortex graphs.

Installation
------------

The easiest way to install abeona is into a `conda <https://conda.io/miniconda.html>`_ environment.

After activating the conda environment, run:

.. code-block:: bash

    conda install abeona -c conda-forge -c bioconda -c wkretzsch

Running
-------

The principal command is `abeona assemble`. This command assembles transcripts from cleaned
short-read RNA-seq reads in FASTA or FASTQ format. For more information, see:

.. code-block:: bash

    abeona assemble --help

License
-------

abeona is distributed under the terms of the
`Apache License, Version 2.0 <https://choosealicense.com/licenses/apache-2.0>`_.


